Package WAPT tis-cytoscape 3.10.2-2 windows

tis-cytoscape

3.10.2-2

Cytoscape is an open source software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data

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Description

package : tis-cytoscape
name : Cytoscape
version : 3.10.2-2
categories : Utilities
maintainer : WAPT Team,Tranquil IT,Pierre Cosson,Ingrid TALBOT
installed_size : 250916604
editor :
licence : opensource_free,cpe:/a:gnu:gpl_v2,wapt_enterprise
signature_date : 2024-08-31T08:00:45.020332
size : 227.88 Mo
locale : all
target_os : windows
impacted_process : Cytoscape
architecture : x64
Homepage : https://cytoscape.org/
Depends :

tis-adoptium-openjdk17-jdk

control


package           : tis-cytoscape
version           : 3.10.2-2
architecture      : x64
section           : base
priority          : optional
name              : Cytoscape
categories        : Utilities
maintainer        : WAPT Team,Tranquil IT,Pierre Cosson,Ingrid TALBOT
description       : Cytoscape is an open source software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data
depends           : tis-adoptium-openjdk17-jdk
conflicts         : 
maturity          : PROD
locale            : all
target_os         : windows
min_wapt_version  : 2.3
sources           : 
installed_size    : 250916604
impacted_process  : Cytoscape
description_fr    : Cytoscape est un logiciel de bioinformatique pour visualiser les réseaux d'interaction moléculaire et s'intégrer aux profils d'expression génique et autres données d'état
description_pl    : Cytoscape to platforma oprogramowania open source do wizualizacji złożonych sieci i integracji ich z dowolnym typem danych atrybutowych. Dostępnych jest wiele aplikacji dla różnych rodzajów domen problemowych, w tym bioinformatyki, analizy sieci społecznych i sieci semantycznej
description_de    : Cytoscape ist eine Open-Source-Softwareplattform zur Visualisierung komplexer Netzwerke und zur Integration dieser Netzwerke mit beliebigen Attributdaten. Es sind zahlreiche Apps für verschiedene Problembereiche verfügbar, darunter Bioinformatik, Analyse sozialer Netzwerke und semantisches Web
description_es    : Cytoscape es una plataforma de software de código abierto para visualizar redes complejas e integrarlas con cualquier tipo de datos de atributos. Dispone de numerosas aplicaciones para diversos tipos de problemas, como la bioinformática, el análisis de redes sociales y la web semántica
description_pt    : Cytoscape é uma plataforma de software de código aberto para visualização de redes complexas e integração destas com qualquer tipo de dados de atributo. Muitos Apps estão disponíveis para vários tipos de domínios problemáticos, incluindo bioinformática, análise de redes sociais, e web semântica
description_it    : Cytoscape è una piattaforma software open source per la visualizzazione di reti complesse e l'integrazione di queste con qualsiasi tipo di dato. Sono disponibili molte applicazioni per vari tipi di problemi, tra cui la bioinformatica, l'analisi delle reti sociali e il web semantico
description_nl    : Cytoscape is een open source software platform om complexe netwerken te visualiseren en deze te integreren met elk type attribuut data. Er zijn veel apps beschikbaar voor verschillende probleemdomeinen, waaronder bio-informatica, sociale netwerkanalyse en semantisch web
description_ru    : Cytoscape - это программная платформа с открытым исходным кодом для визуализации сложных сетей и интеграции их с любыми типами атрибутивных данных. Доступно множество приложений для различных проблемных областей, включая биоинформатику, анализ социальных сетей и семантический веб
audit_schedule    : 
editor            : 
keywords          : molecular,biological,interaction,gene,expression
licence           : opensource_free,cpe:/a:gnu:gpl_v2,wapt_enterprise
homepage          : https://cytoscape.org/
package_uuid      : 94bf114f-a545-4d0e-8a55-900d1321945c
valid_from        : 
valid_until       : 
forced_install_on : 
changelog         : 
min_os_version    : 
max_os_version    : 
icon_sha256sum    : 32def160b88b2c2acb8a84391bb88de44d8a97b9ef49f6791c003acf0fe4292d
signer            : Tranquil IT
signer_fingerprint: 8c5127a75392be9cc9afd0dbae1222a673072c308c14d88ab246e23832e8c6bb
signature         : vFbLY77z4RZ0MV2b82m4lX6fjZuLBxzCd+C6UFdt1uEr8eNnGM1HyJjwFZoZf9tfTzDMWsUJv/HXjZT7h2OCVJ1p9E8D6D91o13fo7i17hSCAfHzfYGfWsm5mCldoRByVNvOGkqNGZhh6Yoo7AM6DzgDNEl0A/OYoPl2fhH00w8kuYJjfrD7yRfmDV8hvJE37QrhHLJ4638SpuCDo7uiVs00pHfQ+Kjrev13Xu1/7ddsVWbLpZljTsFTMpOWG5XXekAr9xGA8gDjymtATXvT1oZx+I7UIJs20KacsTXo0y8IetnHhdBCrAO0QkICpOA8Ld+MvSTiDfWtIbkM0whLMQ==
signature_date    : 2024-08-31T08:00:45.020332
signed_attributes : package,version,architecture,section,priority,name,categories,maintainer,description,depends,conflicts,maturity,locale,target_os,min_wapt_version,sources,installed_size,impacted_process,description_fr,description_pl,description_de,description_es,description_pt,description_it,description_nl,description_ru,audit_schedule,editor,keywords,licence,homepage,package_uuid,valid_from,valid_until,forced_install_on,changelog,min_os_version,max_os_version,icon_sha256sum,signer,signer_fingerprint,signature_date,signed_attributes

Setup.py


# -*- coding: utf-8 -*-
##################################################
# This file is part of WAPT Enterprise
# All right reserved, (c) Tranquil IT Systems 2023
# For more information please refer to
# https://wapt.tranquil.it/store/licences.html
##################################################
from setuphelpers import *


# Usable WAPT package functions: install(), uninstall(), session_setup(), audit(), update_package()
# Declaring global variables - Warnings: 1) WAPT context is only available in package functions; 2) Global variables are not persistent between calls
bin_contains = "Cytoscape"
app_uninstallkey = "5211-3645-3154-2580"
silent_args = "-q"


def install():
    # Declaring local variables
    package_version = control.get_software_version()
    bin_name = glob.glob("*%s*.exe" % bin_contains)[0]

    killalltasks('Cytoscape')
    for uninstall in installed_softwares("Cytoscape"):
        print("Uninstall %s" % uninstall["name"])
        run([uninstall_cmd(uninstall["key"])[0], silent_args])
        wait_uninstallkey_absent(key=uninstall["key"])

    # Installing the packagey
    print("Installing: %s" % bin_name)
    install_exe_if_needed(bin_name, silentflags="-q", key=app_uninstallkey, min_version=package_version, timeout=600)
    uninstallkey.remove(app_uninstallkey)
    run(rf'netsh advfirewall firewall add rule name="cytoscape" program="C:\program files\cytoscape_v{package_version}\cytoscape.exe" protocol=tcp dir=in enable=yes action=allow profile=domain')
    run(rf'netsh advfirewall firewall add rule name="cytoscape" program="C:\program files\cytoscape_v{package_version}\cytoscape.exe" protocol=udp dir=in enable=yes action=allow profile=domain')


def uninstall():
    # change uninstalller argument
    for uninstall in installed_softwares(app_uninstallkey):
        print("Removing: %s" % (uninstall["name"]))
        run([uninstall_cmd(uninstall["key"])[0], silent_args])
        wait_uninstallkey_absent(key=uninstall["key"])


def audit():
    if not uninstall_key_exists(app_uninstallkey):
        print("uninstallkey %s not found" % app_uninstallkey)
        return "ERROR"
    else:
        return "OK"

update_package.py


# -*- coding: utf-8 -*-
##################################################
# This file is part of WAPT Enterprise
# All right reserved, (c) Tranquil IT Systems 2023
# For more information please refer to
# https://wapt.tranquil.it/store/licences.html
##################################################
from setuphelpers import *
import json

bin_contains = "Cytoscape"
silent_args = "-q"
app_uninstallkey = "5211-3645-3154-2580"


def update_package():
    # Declaring local variables
    result = False
    proxies = get_proxies()
    bin_name_sub = bin_contains + "-%s.exe"
    if not proxies:
        proxies = get_proxies_from_wapt_console()
    app_name = control.name
    git_repo = "cytoscape/cytoscape"
    url_api = "https://api.github.com/repos/%s/releases/latest" % git_repo

    # Getting latest version information from official sources
    print("API used is: %s" % url_api)
    json_load = json.loads(wgets(url_api, proxies=proxies))

    for download in json_load["assets"]:
        if bin_contains in download["name"] and "64bit" in download["name"] and "exe" in download["name"]:
            url_dl = download["browser_download_url"]
            version = json_load["tag_name"].replace("v", "")
            latest_bin = download["name"]
            break

    print("Latest %s version is: %s" % (app_name, version))
    print("Download URL is: %s" % url_dl)

    # Downloading latest binaries
    if not isfile(latest_bin):
        print("Downloading: %s" % latest_bin)
        wget(url_dl, latest_bin, proxies=proxies)

        # Checking version from file
    version_from_file = get_version_from_binary(latest_bin)
    print("Changing version to the version number of the binary")
    os.rename(latest_bin, bin_name_sub % version_from_file)
    version = version_from_file

    # Changing version of the package
    if Version(version) > Version(control.get_software_version()):
        print("Software version updated (from: %s to: %s)" % (control.get_software_version(), Version(version)))
        result = True
    control.version = "%s-%s" % (Version(version), control.version.split("-", 1)[-1])
    # control.set_software_version(Version(version))
    control.save_control_to_wapt()

    # Deleting outdated binaries
    remove_outdated_binaries(version)

    # Validating update-package-sources
    return result

manifest.sha256


                                
a4673e9ab7335e8cf071aa77f709092432dae3207c4bc48c919b7309875f3861 : setup.py 
 : __pycache__ 
d9a891bffe1cf9d8badc29a35e2b685955f2b0dd7f5ef8e2c0a9b977bee7ada7 : update_package.py 
32def160b88b2c2acb8a84391bb88de44d8a97b9ef49f6791c003acf0fe4292d : WAPT/icon.png 
a5a97261381e1d0ad46ee15916abec9c2631d0201f5cc50ceb0197a165a0bbbf : WAPT/certificate.crt 
8c5071151592f4736c39dd6bff63a12dbdd84e377827f7018de0f8701e1aaa42 : luti.json 
8e2b92e8f01ccf2fee97dcbdd9fb31cace4f45e6298b8504a0ebe937d46107bb : Cytoscape-3.10.2.exe 
a91812724b84810566199d8b222f6aa04c2de69c496ac22b2f68140f796f31b0 : WAPT/control

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tis-cytoscape

Description

control

Setup.py

update_package.py