Package WAPT tis-chimera 1.18-2 windows

tis-chimera

1.18-2

UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles

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Description

package : tis-chimera
name : UCSF Chimera
version : 1.18-2
categories : Education
maintainer : WAPT Team,Tranquil IT,Amel FRADJ
installed_size :
editor :
licence : proprietary_free,wapt_enterprise
signature_date : 2024-12-15T22:28:25.000000
size : 150.23 Mo
locale :
target_os : windows
impacted_process : UCSF Chimera
architecture : x64
Homepage : https://www.cgl.ucsf.edu/chimera/

control


package           : tis-chimera
version           : 1.18-2
architecture      : x64
section           : base
priority          : optional
name              : UCSF Chimera
categories        : Education
maintainer        : WAPT Team,Tranquil IT,Amel FRADJ
description       : UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles
depends           : 
conflicts         : 
maturity          : PROD
locale            : 
target_os         : windows
min_wapt_version  : 2.3
sources           : 
installed_size    : 
impacted_process  : UCSF Chimera
description_fr    : UCSF Chimera est un programme hautement extensible pour la visualisation interactive et l'analyse des structures moléculaires et des données connexes, y compris les cartes de densité, les assemblages supramoléculaires, les alignements de séquences, les résultats d'amarrage, les trajectoires et les ensembles conformationnels
description_pl    : UCSF Chimera to wysoce rozszerzalny program do interaktywnej wizualizacji i analizy struktur molekularnych i powiązanych danych, w tym map gęstości, złożeń supramolekularnych, dopasowań sekwencji, wyników dokowania, trajektorii i zespołów konformacyjnych
description_de    : UCSF Chimera ist ein hochgradig erweiterbares Programm zur interaktiven Visualisierung und Analyse molekularer Strukturen und zugehöriger Daten, einschließlich Dichtekarten, supramolekularer Assemblierungen, Sequenzausrichtungen, Docking-Ergebnissen, Trajektorien und Konformationsensembles
description_es    : UCSF Chimera es un programa altamente extensible para la visualización interactiva y el análisis de estructuras moleculares y datos relacionados, incluyendo mapas de densidad, ensamblajes supramoleculares, alineaciones de secuencias, resultados de docking, trayectorias y conjuntos conformacionales
description_pt    : O UCSF Chimera é um programa altamente extensível para visualização e análise interactiva de estruturas moleculares e dados relacionados, incluindo mapas de densidade, montagens supramoleculares, alinhamentos de sequências, resultados de acoplamento, trajectórias e conjuntos conformacionais
description_it    : UCSF Chimera è un programma altamente estensibile per la visualizzazione e l'analisi interattiva di strutture molecolari e dati correlati, tra cui mappe di densità, assemblaggi supramolecolari, allineamenti di sequenze, risultati di docking, traiettorie e ensemble conformazionali
description_nl    : UCSF Chimera is een zeer uitbreidbaar programma voor interactieve visualisatie en analyse van moleculaire structuren en gerelateerde gegevens, waaronder dichtheidskaarten, supramoleculaire assemblages, sequentie-uitlijningen, dockingresultaten, trajecten en conformatie-ensembles
description_ru    : UCSF Chimera - это легко расширяемая программа для интерактивной визуализации и анализа молекулярных структур и связанных с ними данных, включая карты плотности, супрамолекулярные сборки, выравнивание последовательностей, результаты докинга, траектории и конформационные ансамбли
audit_schedule    : 
editor            : 
keywords          : 
licence           : proprietary_free,wapt_enterprise
homepage          : https://www.cgl.ucsf.edu/chimera/
package_uuid      : 464eea97-56ad-4740-8a15-2b5b18c307e2
valid_from        : 
valid_until       : 
forced_install_on : 
changelog         : 
min_os_version    : 
max_os_version    : 
icon_sha256sum    : f4c9ce926a27b26e1cb2a2704d70ae12d8b3e03a0f3e47335840c53d21415377
signer            : Tranquil IT
signer_fingerprint: 8c5127a75392be9cc9afd0dbae1222a673072c308c14d88ab246e23832e8c6bb
signature_date    : 2024-12-15T22:28:25.000000
signed_attributes : package,version,architecture,section,priority,name,categories,maintainer,description,depends,conflicts,maturity,locale,target_os,min_wapt_version,sources,installed_size,impacted_process,description_fr,description_pl,description_de,description_es,description_pt,description_it,description_nl,description_ru,audit_schedule,editor,keywords,licence,homepage,package_uuid,valid_from,valid_until,forced_install_on,changelog,min_os_version,max_os_version,icon_sha256sum,signer,signer_fingerprint,signature_date,signed_attributes
signature         : uDbQR4pY9oqnAKg0hY9aL4Eo0fr57CZZy4GJuvJt3K5wvMcvFnzcsBdDi9iSJAUdd/qLXpoY7gO0CoO04gfRoXxOdJYbM6SfnyioCdG12JVHQ3VMhTPpUCW78kTvQxn3ESLneb5/J0/ZAXp2DZnX/1NyLKC4JTywlC4g3NuhOpoyLaldtRs6qUUo6vDnfdlMFfYUxbOBRoB53Ib34J0AJUBQH3EVflC2KX/W0v5/7rhvuAFumIee1F+jJJVG+lsqnFL4XGjm6sNt4k1hu8xTfi+XpkfgS5SehhNqPL+eZYILPtvB8qTkyUCwt4VAkqznggV+1NhAlDrYiWrbiQmVoA==

Setup.py

update_package.py


# -*- coding: utf-8 -*-
from setuphelpers import *
import re


def sanitize_filename(filename):
    """Removes invalid characters from the filename for Windows."""
    return re.sub(r'[<>:"/\\|?*]', '_', filename)


def update_package():
    package_updated = False
    proxies = get_proxies_from_wapt_console()
    if not proxies:
        proxies = get_proxies()

    app_name = control.name
    base_url = "https://www.cgl.ucsf.edu"
    download_page_url = f"{base_url}/chimera/download.html"

    # Étape 1 : Découvrir la dernière version
    print("Fetching the latest version from the download page...")
    session = requests.Session()
    response = session.get(download_page_url, proxies=proxies)
    if response.status_code != 200:
        raise RuntimeError("Failed to retrieve the Chimera download page.")

    # Rechercher la version et le lien dans le contenu HTML
    match = re.search(r"chimera-(\d+\.\d+)-win64\.exe", response.text)
    if not match:
        raise RuntimeError("Failed to detect the latest version from the download page.")

    app_version = match.group(1)
    print(f"Latest version detected: {app_version}")

    # Étape 2 : Accepter les termes de la licence et récupérer le lien de téléchargement
    post_url = f"{base_url}/chimera/cgi-bin/secure/chimera-get.py"
    post_params = {
        "choice": "Accept",
        "file": f"win64/chimera-{app_version}-win64.exe",
    }

    print("Accepting license terms and retrieving download link...")
    response = session.post(post_url, data=post_params, proxies=proxies)
    if response.status_code != 200:
        raise RuntimeError("Failed to accept license and retrieve download link.")

    # Extraire le lien de téléchargement final
    url_stub = None
    for line in response.text.splitlines():
        if "href=" in line:
            url_stub = line.split('href="')[1].split('"')[0]
            break

    if not url_stub:
        raise RuntimeError("Failed to parse the download link from the license acceptance page.")

    download_url = base_url + url_stub
    latest_bin = f"chimera-{app_version}-win64.exe"  # Forcer le bon nom de fichier

    # Étape 3 : Télécharger le fichier binaire
    print(f"Latest {app_name} version is: {app_version}")
    print(f"Download URL is: {download_url}")

    if not isfile(latest_bin):
        print(f"Downloading: {latest_bin}")
        # Télécharger avec wget en forçant le nom correct
        wget(download_url, latest_bin, proxies=proxies)
    else:
        print(f"Binary is already present: {latest_bin}")

    # Étape 4 : Mettre à jour la version du package
    if Version(app_version) > Version(control.get_software_version()):
        print(f"Software version updated (from: {control.get_software_version()} to: {Version(app_version)})")
        package_updated = True
    else:
        print(f"Software version up-to-date ({Version(app_version)})")

    # Nettoyage des fichiers inutiles
    for f in glob.glob(f'*.exe'):
        if f != latest_bin:
            remove_file(f)

    # Mettre à jour les informations du package
    control.set_software_version(app_version)
    control.save_control_to_wapt()

    return package_updated

manifest.sha256


                                
38d056ab130f7bf7c481c12636a4e9959de36561d3dfcbe54c6e3571bc0c1dc3 : WAPT/certificate.crt 
42d1c186564043c48981478f60b19be407b526090504311e9c1324d11664d8c3 : WAPT/control 
f4c9ce926a27b26e1cb2a2704d70ae12d8b3e03a0f3e47335840c53d21415377 : WAPT/icon.png 
ed12e67634f3692c72ff1f1ca1cbeb30f8d367d0de005a72dcca7485bf10ba48 : chimera-1.18-win64.exe 
59253ca97a5df2fda6c56cce78410505a98e91830add3adc277884552021228e : luti.json 
cd3736d700590b4e6ebfacebf3aebba9ff8a873f80dbd1fd97558ca267143e34 : setup.py 
bcc4e60fb3d57fc4e33ea2512274e5aed4b0738fb16ed9ce3b5fad02c62e9197 : update_package.py

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tis-chimera

Description

control

Setup.py

update_package.py